Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.

  1. Zhang, Xiao-Qi
  2. Barrero, Roberto A.
  3. Zhang, Qisen
  4. Li, Lin
  5. Bayer, Micha
  6. Bolser, Daniel
  7. Taudien, Stefan
  8. Felder, Marius
  9. Hastie, Alex
  10. Šimková, Hana
  11. Staňková, Helena
  12. Vrána, Jan
  13. Chan, Saki
  14. Muñoz-Amatriaín, María
  15. Ounit, Rachid
  16. Wanamaker, Steve
  17. Aliyeva-Schnorr, Lala
  18. Grasso, Stefano
  19. Tanskanen, Jaakko
  20. Sampath, Dharanya
  21. Heavens, Darren
  22. Cao, Sujie
  23. Chapman, Brett
  24. Dai, Fei
  25. Hang, Yong
  26. Li, Hua
  27. Li, Xuan
  28. Lin, Chongyun
  29. McCooke, John K.
  30. Tan, Cong
  31. Wang, Songbo
  32. Yin, Shuya
  33. Zhou, Gaofeng
  34. Poland, Jesse A.
  35. Bellgard, Matthew I.
  36. Doležel, Jaroslav
  37. Ayling, Sarah
  38. Lonardi, Stefano
  39. Langridge, Peter
  40. Muehlbauer, Gary J.
  41. Kersey, Paul
  42. Clark, Matthew D.
  43. Caccamo, Mario
  44. Schulman, Alan H.
  45. Close, Timothy J.
  46. Hansson, Mats
  47. Zhang, Guoping
  48. Braumann, Ilka
  49. Li, Chengdao
  50. Waugh, Robbie
  51. Beier, Sebastian
  52. Himmelbach, Axel
  53. Colmsee, Christian
  54. Groth, Marco
  55. Schmutzer, Thomas
  56. Houben, Andreas
  57. Platzer, Matthias
  58. Stein, Nils
  59. Mascher, Martin

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1000 Titel
  • Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.
1000 Autor/in
  1. Zhang, Xiao-Qi |
  2. Barrero, Roberto A. |
  3. Zhang, Qisen |
  4. Li, Lin |
  5. Bayer, Micha |
  6. Bolser, Daniel |
  7. Taudien, Stefan |
  8. Felder, Marius |
  9. Hastie, Alex |
  10. Šimková, Hana |
  11. Staňková, Helena |
  12. Vrána, Jan |
  13. Chan, Saki |
  14. Muñoz-Amatriaín, María |
  15. Ounit, Rachid |
  16. Wanamaker, Steve |
  17. Aliyeva-Schnorr, Lala |
  18. Grasso, Stefano |
  19. Tanskanen, Jaakko |
  20. Sampath, Dharanya |
  21. Heavens, Darren |
  22. Cao, Sujie |
  23. Chapman, Brett |
  24. Dai, Fei |
  25. Hang, Yong |
  26. Li, Hua |
  27. Li, Xuan |
  28. Lin, Chongyun |
  29. McCooke, John K. |
  30. Tan, Cong |
  31. Wang, Songbo |
  32. Yin, Shuya |
  33. Zhou, Gaofeng |
  34. Poland, Jesse A. |
  35. Bellgard, Matthew I. |
  36. Doležel, Jaroslav |
  37. Ayling, Sarah |
  38. Lonardi, Stefano |
  39. Langridge, Peter |
  40. Muehlbauer, Gary J. |
  41. Kersey, Paul |
  42. Clark, Matthew D. |
  43. Caccamo, Mario |
  44. Schulman, Alan H. |
  45. Close, Timothy J. |
  46. Hansson, Mats |
  47. Zhang, Guoping |
  48. Braumann, Ilka |
  49. Li, Chengdao |
  50. Waugh, Robbie |
  51. Beier, Sebastian |
  52. Himmelbach, Axel |
  53. Colmsee, Christian |
  54. Groth, Marco |
  55. Schmutzer, Thomas |
  56. Houben, Andreas |
  57. Platzer, Matthias |
  58. Stein, Nils |
  59. Mascher, Martin |
1000 Erscheinungsjahr 2017
1000 LeibnizOpen
1000 Art der Datei
1000 Publikationstyp
  1. Artikel |
1000 Online veröffentlicht
  • 2017-04-27
1000 Erschienen in
1000 Quellenangabe
  • 4:170044
1000 FRL-Sammlung
1000 Copyrightjahr
  • 2017
1000 Lizenz
1000 Verlagsversion
  • https://doi.org/10.1038/sdata.2017.44 |
  • https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5407242/ |
1000 Publikationsstatus
1000 Begutachtungsstatus
1000 Sprache der Publikation
1000 Abstract/Summary
  • Barley (Hordeum vulgare L.) is a cereal grass mainly used as animal fodder and raw material for the malting industry. The map-based reference genome sequence of barley cv. ‘Morex’ was constructed by the International Barley Genome Sequencing Consortium (IBSC) using hierarchical shotgun sequencing. Here, we report the experimental and computational procedures to (i) sequence and assemble more than 80,000 bacterial artificial chromosome (BAC) clones along the minimum tiling path of a genome-wide physical map, (ii) find and validate overlaps between adjacent BACs, (iii) construct 4,265 non-redundant sequence scaffolds representing clusters of overlapping BACs, and (iv) order and orient these BAC clusters along the seven barley chromosomes using positional information provided by dense genetic maps, an optical map and chromosome conformation capture sequencing (Hi-C). Integrative access to these sequence and mapping resources is provided by the barley genome explorer (BARLEX).
1000 Sacherschließung
lokal Genome assembly algorithms
lokal Plant genetics
lokal DNA sequencing
1000 Fachgruppe
  1. Biologie |
1000 Fächerklassifikation (DDC)
1000 Liste der Beteiligten
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1000 Förderer
  1. Ministry of Education and Research (BMBF) |
  2. Leibniz Association |
  3. Scottish Government |
  4. UK Biotechnology and Biological Sciences Research Council (BBSRC) |
  5. Goverment of Finland |
  6. BioNano |
  7. Carlsberg Foundation |
  8. Grain Research and Development Corporation (GRDC) |
  9. Department of Agricultural and Food, Government of Western Australia |
  10. National Natural Science Foundation of China (NSFC) |
  11. NSFC |
  12. Czech Ministry of Education, Youth and Sports |
  13. National Science Foundation |
  14. United States Department of Agriculture (USDA), Agriculture and Food Research Initiative Plant Genome, Genetics and Breeding Program of USDA-CSREES-NIFA |
  15. University of California |
1000 Fördernummer
  1. 0314000; 0315954; 031A536
  2. -
  3. BB/100663X/1
  4. BB/100663X/1; BB/I008357/1; BB/I008071/1; BB/J010375/1; BB/J004669/1
  5. 266430
  6. -
  7. 2012_01_0461
  8. DAW00233
  9. 681
  10. 31129005
  11. 31330055
  12. LO1204
  13. DBI 0321756; DBI-1062301; DBI 0321756
  14. 2009-65300-05645; 2011-68002-30029
  15. CA-R-BPS-5306-H
1000 Förderprogramm
  1. ‘BARLEX’; ‘TRITEX’; ‘de.NBI’
  2. ‘Pakt f. Forschung und Innovation’; ‘sequencing barley chromosome 3H’
  3. -
  4. Platforms and Pipelines group; BBSRC Institute Strategic Programme funding for Bioinformatics
  5. -
  6. -
  7. -
  8. -
  9. -
  10. -
  11. -
  12. -
  13. ‘Coupling EST and Bacterial Artificial Chromosome Resources to Access the Barley Genome’; ABI grant; ‘Algorithms for Genome Assembly of Ultra-deep Sequencing Data’
  14. ‘Advancing the Barley Genome’; ‘TriticeaeCAP’
  15. -
1000 Dateien
1000 Förderung
  1. 1000 joinedFunding-child
    1000 Förderer Ministry of Education and Research (BMBF) |
    1000 Förderprogramm ‘BARLEX’; ‘TRITEX’; ‘de.NBI’
    1000 Fördernummer 0314000; 0315954; 031A536
  2. 1000 joinedFunding-child
    1000 Förderer Leibniz Association |
    1000 Förderprogramm ‘Pakt f. Forschung und Innovation’; ‘sequencing barley chromosome 3H’
    1000 Fördernummer -
  3. 1000 joinedFunding-child
    1000 Förderer Scottish Government |
    1000 Förderprogramm -
    1000 Fördernummer BB/100663X/1
  4. 1000 joinedFunding-child
    1000 Förderer UK Biotechnology and Biological Sciences Research Council (BBSRC) |
    1000 Förderprogramm Platforms and Pipelines group; BBSRC Institute Strategic Programme funding for Bioinformatics
    1000 Fördernummer BB/100663X/1; BB/I008357/1; BB/I008071/1; BB/J010375/1; BB/J004669/1
  5. 1000 joinedFunding-child
    1000 Förderer Goverment of Finland |
    1000 Förderprogramm -
    1000 Fördernummer 266430
  6. 1000 joinedFunding-child
    1000 Förderer BioNano |
    1000 Förderprogramm -
    1000 Fördernummer -
  7. 1000 joinedFunding-child
    1000 Förderer Carlsberg Foundation |
    1000 Förderprogramm -
    1000 Fördernummer 2012_01_0461
  8. 1000 joinedFunding-child
    1000 Förderer Grain Research and Development Corporation (GRDC) |
    1000 Förderprogramm -
    1000 Fördernummer DAW00233
  9. 1000 joinedFunding-child
    1000 Förderer Department of Agricultural and Food, Government of Western Australia |
    1000 Förderprogramm -
    1000 Fördernummer 681
  10. 1000 joinedFunding-child
    1000 Förderer National Natural Science Foundation of China (NSFC) |
    1000 Förderprogramm -
    1000 Fördernummer 31129005
  11. 1000 joinedFunding-child
    1000 Förderer NSFC |
    1000 Förderprogramm -
    1000 Fördernummer 31330055
  12. 1000 joinedFunding-child
    1000 Förderer Czech Ministry of Education, Youth and Sports |
    1000 Förderprogramm -
    1000 Fördernummer LO1204
  13. 1000 joinedFunding-child
    1000 Förderer National Science Foundation |
    1000 Förderprogramm ‘Coupling EST and Bacterial Artificial Chromosome Resources to Access the Barley Genome’; ABI grant; ‘Algorithms for Genome Assembly of Ultra-deep Sequencing Data’
    1000 Fördernummer DBI 0321756; DBI-1062301; DBI 0321756
  14. 1000 joinedFunding-child
    1000 Förderer United States Department of Agriculture (USDA), Agriculture and Food Research Initiative Plant Genome, Genetics and Breeding Program of USDA-CSREES-NIFA |
    1000 Förderprogramm ‘Advancing the Barley Genome’; ‘TriticeaeCAP’
    1000 Fördernummer 2009-65300-05645; 2011-68002-30029
  15. 1000 joinedFunding-child
    1000 Förderer University of California |
    1000 Förderprogramm -
    1000 Fördernummer CA-R-BPS-5306-H
1000 Objektart article
1000 Beschrieben durch
1000 @id frl:6406174.rdf
1000 Erstellt am 2018-01-05T10:45:32.177+0100
1000 Erstellt von 122
1000 beschreibt frl:6406174
1000 Bearbeitet von 218
1000 Zuletzt bearbeitet Mon May 07 12:19:47 CEST 2018
1000 Objekt bearb. Mon May 07 12:19:47 CEST 2018
1000 Vgl. frl:6406174
1000 Oai Id
  1. oai:frl.publisso.de:frl:6406174 |
1000 Sichtbarkeit Metadaten public
1000 Sichtbarkeit Daten public
1000 Gegenstand von

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