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Feser-J Integrat Bioinform-2022.pdf 865,44KB
WeightNameValue
1000 Titel
  • On the way to plant data commons - a genotyping use case
1000 Autor/in
  1. Feser, Manuel |
  2. König, Patrick |
  3. Fiebig, Anne |
  4. Arend, Daniel |
  5. Lange, Matthias |
  6. Scholz, Uwe |
1000 Erscheinungsjahr 2022
1000 LeibnizOpen
1000 Publikationstyp
  1. Artikel |
1000 Online veröffentlicht
  • 2022-09-05
1000 Erschienen in
1000 Quellenangabe
  • 19(4):20220033
1000 FRL-Sammlung
1000 Copyrightjahr
  • 2022
1000 Lizenz
1000 Verlagsversion
  • https://dx.doi.org/10.1515/jib-2022-0033 |
  • https://pmc.ncbi.nlm.nih.gov/articles/PMC9800039/ |
1000 Publikationsstatus
1000 Begutachtungsstatus
1000 Sprache der Publikation
1000 Abstract/Summary
  • Over the last years it has been observed that the progress in data collection in life science has created increasing demand and opportunities for advanced bioinformatics. This includes data management as well as the individual data analysis and often covers the entire data life cycle. A variety of tools have been developed to store, share, or reuse the data produced in the different domains such as genotyping. Especially imputation, as a subfield of genotyping, requires good Research Data Management (RDM) strategies to enable use and re-use of genotypic data. To aim for sustainable software, it is necessary to develop tools and surrounding ecosystems, which are reusable and maintainable. Reusability in the context of streamlined tools can e.g. be achieved by standardizing the input and output of the different tools and adapting to open and broadly used file formats. By using such established file formats, the tools can also be connected with others, improving the overall interoperability of the software. Finally, it is important to build strong communities that maintain the tools by developing and contributing new features and maintenance updates. In this article, concepts for this will be presented for an imputation service.
1000 Sacherschließung
lokal plants
lokal cloud computing
lokal biodiversity
lokal research data commons
lokal imputation
1000 Fächerklassifikation (DDC)
1000 Liste der Beteiligten
  1. https://orcid.org/0000-0001-6546-1818|https://orcid.org/0000-0002-8948-6793|https://orcid.org/0000-0003-3159-3593|https://orcid.org/0000-0002-2455-5938|https://orcid.org/0000-0002-4316-078X|https://orcid.org/0000-0001-6113-3518
1000 Label
1000 Förderer
  1. Deutsche Forschungsgemeinschaft |
  2. Bundesministerium für Bildung und Forschung |
  3. Horizon 2020 Framework Programme |
1000 Fördernummer
  1. 442032008
  2. 031B0184B;031B0884A;031B0770A
  3. 862613
1000 Förderprogramm
  1. -
  2. GeneBank2.0;SHAPE-II;AVATARS
  3. AGENT
1000 Dateien
  1. On the way to plant data commons - a genotyping use case
1000 Förderung
  1. 1000 joinedFunding-child
    1000 Förderer Deutsche Forschungsgemeinschaft |
    1000 Förderprogramm -
    1000 Fördernummer 442032008
  2. 1000 joinedFunding-child
    1000 Förderer Bundesministerium für Bildung und Forschung |
    1000 Förderprogramm GeneBank2.0;SHAPE-II;AVATARS
    1000 Fördernummer 031B0184B;031B0884A;031B0770A
  3. 1000 joinedFunding-child
    1000 Förderer Horizon 2020 Framework Programme |
    1000 Förderprogramm AGENT
    1000 Fördernummer 862613
1000 Objektart article
1000 Beschrieben durch
1000 @id frl:6489221.rdf
1000 Erstellt am 2024-11-28T10:44:25.038+0100
1000 Erstellt von 325
1000 beschreibt frl:6489221
1000 Bearbeitet von 317
1000 Zuletzt bearbeitet 2025-02-18T10:55:09.096+0100
1000 Objekt bearb. Tue Feb 18 10:54:57 CET 2025
1000 Vgl. frl:6489221
1000 Oai Id
  1. oai:frl.publisso.de:frl:6489221 |
1000 Sichtbarkeit Metadaten public
1000 Sichtbarkeit Daten public
1000 Gegenstand von

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