Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.

  1. Beier, Sebastian
  2. Himmelbach, Axel
  3. Colmsee, Christian
  4. Zhang, Xiao-Qi
  5. Barrero, Roberto A.
  6. Zhang, Qisen
  7. Li, Lin
  8. Bayer, Micha
  9. Bolser, Daniel
  10. Taudien, Stefan
  11. Groth, Marco
  12. Felder, Marius
  13. Hastie, Alex
  14. Šimková, Hana
  15. Staňková, Helena
  16. Vrána, Jan
  17. Chan, Saki
  18. Muñoz-Amatriaín, María
  19. Ounit, Rachid
  20. Wanamaker, Steve
  21. Schmutzer, Thomas
  22. Aliyeva-Schnorr, Lala
  23. Grasso, Stefano
  24. Tanskanen, Jaakko
  25. Sampath, Dharanya
  26. Heavens, Darren
  27. Cao, Sujie
  28. Chapman, Brett
  29. Dai, Fei
  30. Han, Yong
  31. Li, Hua
  32. Li, Xuan
  33. Lin, Chongyun
  34. McCooke, John K.
  35. Tan, Cong
  36. Wang, Songbo
  37. Yin, Shuya
  38. Zhou, Gaofeng
  39. Poland, Jesse A.
  40. Bellgard, Matthew I.
  41. Houben, Andreas
  42. Doležel, Jaroslav
  43. Ayling, Sarah
  44. Lonardi, Stefano
  45. Langridge, Peter
  46. Muehlbauer, Gary J.
  47. Kersey, Paul
  48. Clark, Matthew D.
  49. Caccamo, Mario
  50. Schulman, Alan H.
  51. Platzer, Matthias
  52. Close, Timothy J.
  53. Hansson, Mats
  54. Zhang, Guoping
  55. Braumann, Ilka
  56. Li, Chengdao
  57. Waugh, Robbie
  58. Scholz, Uwe
  59. Stein, Nils
  60. Mascher, Martin

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1000 Titel
  • Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.
1000 Autor/in
  1. Beier, Sebastian |
  2. Himmelbach, Axel |
  3. Colmsee, Christian |
  4. Zhang, Xiao-Qi |
  5. Barrero, Roberto A. |
  6. Zhang, Qisen |
  7. Li, Lin |
  8. Bayer, Micha |
  9. Bolser, Daniel |
  10. Taudien, Stefan |
  11. Groth, Marco |
  12. Felder, Marius |
  13. Hastie, Alex |
  14. Šimková, Hana |
  15. Staňková, Helena |
  16. Vrána, Jan |
  17. Chan, Saki |
  18. Muñoz-Amatriaín, María |
  19. Ounit, Rachid |
  20. Wanamaker, Steve |
  21. Schmutzer, Thomas |
  22. Aliyeva-Schnorr, Lala |
  23. Grasso, Stefano |
  24. Tanskanen, Jaakko |
  25. Sampath, Dharanya |
  26. Heavens, Darren |
  27. Cao, Sujie |
  28. Chapman, Brett |
  29. Dai, Fei |
  30. Han, Yong |
  31. Li, Hua |
  32. Li, Xuan |
  33. Lin, Chongyun |
  34. McCooke, John K. |
  35. Tan, Cong |
  36. Wang, Songbo |
  37. Yin, Shuya |
  38. Zhou, Gaofeng |
  39. Poland, Jesse A. |
  40. Bellgard, Matthew I. |
  41. Houben, Andreas |
  42. Doležel, Jaroslav |
  43. Ayling, Sarah |
  44. Lonardi, Stefano |
  45. Langridge, Peter |
  46. Muehlbauer, Gary J. |
  47. Kersey, Paul |
  48. Clark, Matthew D. |
  49. Caccamo, Mario |
  50. Schulman, Alan H. |
  51. Platzer, Matthias |
  52. Close, Timothy J. |
  53. Hansson, Mats |
  54. Zhang, Guoping |
  55. Braumann, Ilka |
  56. Li, Chengdao |
  57. Waugh, Robbie |
  58. Scholz, Uwe |
  59. Stein, Nils |
  60. Mascher, Martin |
1000 Erscheinungsjahr 2017
1000 LeibnizOpen
1000 Publikationstyp
  1. Artikel |
1000 Online veröffentlicht
  • 2017-04-27
1000 Erschienen in
1000 Quellenangabe
  • 4:170044
1000 FRL-Sammlung
1000 Copyrightjahr
  • 2017
1000 Lizenz
1000 Verlagsversion
  • https://doi.org/10.1038/sdata.2017.44 |
  • https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5407242/ |
1000 Publikationsstatus
1000 Begutachtungsstatus
1000 Sprache der Publikation
1000 Abstract/Summary
  • Barley (Hordeum vulgare L.) is a cereal grass mainly used as animal fodder and raw material for the malting industry. The map-based reference genome sequence of barley cv. ‘Morex’ was constructed by the International Barley Genome Sequencing Consortium (IBSC) using hierarchical shotgun sequencing. Here, we report the experimental and computational procedures to (i) sequence and assemble more than 80,000 bacterial artificial chromosome (BAC) clones along the minimum tiling path of a genome-wide physical map, (ii) find and validate overlaps between adjacent BACs, (iii) construct 4,265 non-redundant sequence scaffolds representing clusters of overlapping BACs, and (iv) order and orient these BAC clusters along the seven barley chromosomes using positional information provided by dense genetic maps, an optical map and chromosome conformation capture sequencing (Hi-C). Integrative access to these sequence and mapping resources is provided by the barley genome explorer (BARLEX).
1000 Sacherschließung
lokal Genome assembly algorithms
lokal Plant genetics
lokal DNA sequencing
1000 Fächerklassifikation (DDC)
1000 Liste der Beteiligten
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1000 Label
1000 Förderer
  1. Ministry of Education and Research (BMBF) |
  2. Leibniz Association |
  3. Scottish Government |
  4. UK Biotechnology and Biological Sciences Research Council (BBSRC) |
  5. Goverment of Finland |
  6. BioNano |
  7. Carlsberg Foundation |
  8. Grain Research and Development Corporation (GRDC) |
  9. Department of Agricultural and Food, Government of Western Australia |
  10. National Natural Science Foundation of China (NSFC) |
  11. NSFC |
  12. Czech Ministry of Education, Youth and Sports |
  13. National Science Foundation |
  14. United States Department of Agriculture (USDA), Agriculture and Food Research Initiative Plant Genome, Genetics and Breeding Program of USDA-CSREES-NIFA |
  15. University of California |
1000 Fördernummer
  1. 0314000; 0315954; 031A536
  2. -
  3. BB/100663X/1
  4. BB/100663X/1; BB/I008357/1; BB/I008071/1; BB/J010375/1; BB/J004669/1
  5. 266430
  6. -
  7. 2012_01_0461
  8. DAW00233
  9. 681
  10. 31129005
  11. 31330055
  12. LO1204
  13. DBI 0321756; DBI-1062301; DBI 0321756
  14. 2009-65300-05645; 2011-68002-30029
  15. CA-R-BPS-5306-H
1000 Förderprogramm
  1. ‘BARLEX’; ‘TRITEX’; ‘de.NBI’
  2. ‘Pakt f. Forschung und Innovation’; ‘sequencing barley chromosome 3H’
  3. -
  4. Platforms and Pipelines group; BBSRC Institute Strategic Programme funding for Bioinformatics
  5. -
  6. -
  7. -
  8. -
  9. -
  10. -
  11. -
  12. -
  13. ‘Coupling EST and Bacterial Artificial Chromosome Resources to Access the Barley Genome’; ABI grant; ‘Algorithms for Genome Assembly of Ultra-deep Sequencing Data’
  14. ‘Advancing the Barley Genome’; ‘TriticeaeCAP’
  15. -
1000 Dateien
1000 Förderung
  1. 1000 joinedFunding-child
    1000 Förderer Ministry of Education and Research (BMBF) |
    1000 Förderprogramm ‘BARLEX’; ‘TRITEX’; ‘de.NBI’
    1000 Fördernummer 0314000; 0315954; 031A536
  2. 1000 joinedFunding-child
    1000 Förderer Leibniz Association |
    1000 Förderprogramm ‘Pakt f. Forschung und Innovation’; ‘sequencing barley chromosome 3H’
    1000 Fördernummer -
  3. 1000 joinedFunding-child
    1000 Förderer Scottish Government |
    1000 Förderprogramm -
    1000 Fördernummer BB/100663X/1
  4. 1000 joinedFunding-child
    1000 Förderer UK Biotechnology and Biological Sciences Research Council (BBSRC) |
    1000 Förderprogramm Platforms and Pipelines group; BBSRC Institute Strategic Programme funding for Bioinformatics
    1000 Fördernummer BB/100663X/1; BB/I008357/1; BB/I008071/1; BB/J010375/1; BB/J004669/1
  5. 1000 joinedFunding-child
    1000 Förderer Goverment of Finland |
    1000 Förderprogramm -
    1000 Fördernummer 266430
  6. 1000 joinedFunding-child
    1000 Förderer BioNano |
    1000 Förderprogramm -
    1000 Fördernummer -
  7. 1000 joinedFunding-child
    1000 Förderer Carlsberg Foundation |
    1000 Förderprogramm -
    1000 Fördernummer 2012_01_0461
  8. 1000 joinedFunding-child
    1000 Förderer Grain Research and Development Corporation (GRDC) |
    1000 Förderprogramm -
    1000 Fördernummer DAW00233
  9. 1000 joinedFunding-child
    1000 Förderer Department of Agricultural and Food, Government of Western Australia |
    1000 Förderprogramm -
    1000 Fördernummer 681
  10. 1000 joinedFunding-child
    1000 Förderer National Natural Science Foundation of China (NSFC) |
    1000 Förderprogramm -
    1000 Fördernummer 31129005
  11. 1000 joinedFunding-child
    1000 Förderer NSFC |
    1000 Förderprogramm -
    1000 Fördernummer 31330055
  12. 1000 joinedFunding-child
    1000 Förderer Czech Ministry of Education, Youth and Sports |
    1000 Förderprogramm -
    1000 Fördernummer LO1204
  13. 1000 joinedFunding-child
    1000 Förderer National Science Foundation |
    1000 Förderprogramm ‘Coupling EST and Bacterial Artificial Chromosome Resources to Access the Barley Genome’; ABI grant; ‘Algorithms for Genome Assembly of Ultra-deep Sequencing Data’
    1000 Fördernummer DBI 0321756; DBI-1062301; DBI 0321756
  14. 1000 joinedFunding-child
    1000 Förderer United States Department of Agriculture (USDA), Agriculture and Food Research Initiative Plant Genome, Genetics and Breeding Program of USDA-CSREES-NIFA |
    1000 Förderprogramm ‘Advancing the Barley Genome’; ‘TriticeaeCAP’
    1000 Fördernummer 2009-65300-05645; 2011-68002-30029
  15. 1000 joinedFunding-child
    1000 Förderer University of California |
    1000 Förderprogramm -
    1000 Fördernummer CA-R-BPS-5306-H
1000 Objektart article
1000 Beschrieben durch
1000 @id frl:6406174.rdf
1000 Erstellt am 2018-01-05T10:45:32.177+0100
1000 Erstellt von 122
1000 beschreibt frl:6406174
1000 Bearbeitet von 317
1000 Zuletzt bearbeitet Fri Jun 24 10:40:43 CEST 2022
1000 Objekt bearb. Fri Jun 24 10:40:42 CEST 2022
1000 Vgl. frl:6406174
1000 Oai Id
  1. oai:frl.publisso.de:frl:6406174 |
1000 Sichtbarkeit Metadaten public
1000 Sichtbarkeit Daten public
1000 Gegenstand von

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