A first generation whole genome RH map of the river buffalo with comparison to domestic cattle

  1. Amaral, M. Elisabete J.
  2. Grant, Jason R.
  3. Riggs, Penny K.
  4. Stafuzza, Nedenia B.
  5. Rodrigues Filho, Edson A.
  6. Weikard, Rosemarie
  7. Brunner, Ronald M.
  8. Kochan, Kelli J.
  9. Greco, Anthony J.
  10. Jeong, Jooha
  11. Cai, Zhipeng
  12. Lin, Guohui
  13. Prasad, Aparna
  14. Kumar, Satish
  15. Saradhi, G. Pardha
  16. Mathew, Boby
  17. Kumar, M. Aravind
  18. Miziara, Melissa N.
  19. Mariani, Paola
  20. Caetano, Alexandre R.
  21. Galvao, Stephan R.
  22. Tantia, Madhu S.
  23. Vijh, Ramesh K.
  24. Mishra, Bina
  25. Kumar, S. T. Bharani
  26. Pelai, Vanderlei A.
  27. Santana, Andre M.
  28. Fornitano, Larissa C.
  29. Jones, Brittany C.
  30. Tonhati, Humberto
  31. Moore, Stephen
  32. Stothard, Paul
  33. Womack, James E.
  34. Goldammer, Tom ORCID logo

Download
art:10.1186/1471-2164-9-631.pdf 540,82KB
WeightNameValue
1000 Titel
  • A first generation whole genome RH map of the river buffalo with comparison to domestic cattle
1000 Autor/in
  1. Amaral, M. Elisabete J. |
  2. Grant, Jason R. |
  3. Riggs, Penny K. |
  4. Stafuzza, Nedenia B. |
  5. Rodrigues Filho, Edson A. |
  6. Weikard, Rosemarie |
  7. Brunner, Ronald M. |
  8. Kochan, Kelli J. |
  9. Greco, Anthony J. |
  10. Jeong, Jooha |
  11. Cai, Zhipeng |
  12. Lin, Guohui |
  13. Prasad, Aparna |
  14. Kumar, Satish |
  15. Saradhi, G. Pardha |
  16. Mathew, Boby |
  17. Kumar, M. Aravind |
  18. Miziara, Melissa N. |
  19. Mariani, Paola |
  20. Caetano, Alexandre R. |
  21. Galvao, Stephan R. |
  22. Tantia, Madhu S. |
  23. Vijh, Ramesh K. |
  24. Mishra, Bina |
  25. Kumar, S. T. Bharani |
  26. Pelai, Vanderlei A. |
  27. Santana, Andre M. |
  28. Fornitano, Larissa C. |
  29. Jones, Brittany C. |
  30. Tonhati, Humberto |
  31. Moore, Stephen |
  32. Stothard, Paul |
  33. Womack, James E. |
  34. Goldammer, Tom |
1000 Erscheinungsjahr 2008
1000 LeibnizOpen
1000 Publikationstyp
  1. Artikel |
1000 Online veröffentlicht
  • 2008-12-24
1000 Erschienen in
1000 Quellenangabe
  • 9: 631
1000 FRL-Sammlung
1000 Copyrightjahr
  • 2008
1000 Lizenz
1000 Verlagsversion
  • http://dx.doi.org/10.1186/1471-2164-9-631 |
  • https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2625372/ |
1000 Ergänzendes Material
  • http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-9-631#Declarations |
1000 Publikationsstatus
1000 Begutachtungsstatus
1000 Sprache der Publikation
1000 Abstract/Summary
  • BACKGROUND: The recently constructed river buffalo whole-genome radiation hybrid panel (BBURH5000) has already been used to generate preliminary radiation hybrid (RH) maps for several chromosomes, and buffalo-bovine comparative chromosome maps have been constructed. Here, we present the first-generation whole genome RH map (WG-RH) of the river buffalo generated from cattle-derived markers. The RH maps aligned to bovine genome sequence assembly Btau_4.0, providing valuable comparative mapping information for both species. RESULTS: A total of 3990 markers were typed on the BBURH5000 panel, of which 3072 were cattle derived SNPs. The remaining 918 were classified as cattle sequence tagged site (STS), including coding genes, ESTs, and microsatellites. Average retention frequency per chromosome was 27.3% calculated with 3093 scorable markers distributed in 43 linkage groups covering all autosomes (24) and the X chromosomes at a LOD ≥ 8. The estimated total length of the WG-RH map is 36,933 cR5000. Fewer than 15% of the markers (472) could not be placed within any linkage group at a LOD score ≥ 8. Linkage group order for each chromosome was determined by incorporation of markers previously assigned by FISH and by alignment with the bovine genome sequence assembly (Btau_4.0). CONCLUSION: We obtained radiation hybrid chromosome maps for the entire river buffalo genome based on cattle-derived markers. The alignments of our RH maps to the current bovine genome sequence assembly (Btau_4.0) indicate regions of possible rearrangements between the chromosomes of both species. The river buffalo represents an important agricultural species whose genetic improvement has lagged behind other species due to limited prior genomic characterization. We present the first-generation RH map which provides a more extensive resource for positional candidate cloning of genes associated with complex traits and also for large-scale physical mapping of the river buffalo genome.
1000 Fächerklassifikation (DDC)
1000 Liste der Beteiligten
  1. https://frl.publisso.de/adhoc/creator/QW1hcmFsLCBNLiBFbGlzYWJldGUgSi4=|https://frl.publisso.de/adhoc/creator/R3JhbnQsIEphc29uIFIu|https://frl.publisso.de/adhoc/creator/UmlnZ3MsIFBlbm55IEsu|https://frl.publisso.de/adhoc/creator/U3RhZnV6emEsIE5lZGVuaWEgQi4=|https://frl.publisso.de/adhoc/creator/Um9kcmlndWVzIEZpbGhvLCBFZHNvbiBBLg==|https://frl.publisso.de/adhoc/creator/V2Vpa2FyZCwgUm9zZW1hcmll|https://frl.publisso.de/adhoc/creator/QnJ1bm5lciwgUm9uYWxkIE0u|https://frl.publisso.de/adhoc/creator/S29jaGFuLCBLZWxsaSBKLg==|https://frl.publisso.de/adhoc/creator/R3JlY28sIEFudGhvbnkgSi4=|https://frl.publisso.de/adhoc/creator/SmVvbmcsIEpvb2hh|https://frl.publisso.de/adhoc/creator/Q2FpLCBaaGlwZW5n|https://frl.publisso.de/adhoc/creator/TGluLCBHdW9odWk=|https://frl.publisso.de/adhoc/creator/UHJhc2FkLCBBcGFybmE=|https://frl.publisso.de/adhoc/creator/S3VtYXIsIFNhdGlzaA==|https://frl.publisso.de/adhoc/creator/U2FyYWRoaSwgRy4gUGFyZGhh|https://frl.publisso.de/adhoc/creator/TWF0aGV3LCBCb2J5|https://frl.publisso.de/adhoc/creator/S3VtYXIsIE0uIEFyYXZpbmQ=|https://frl.publisso.de/adhoc/creator/TWl6aWFyYSwgTWVsaXNzYSBOLg==|https://frl.publisso.de/adhoc/creator/TWFyaWFuaSwgUGFvbGE=|https://frl.publisso.de/adhoc/creator/Q2FldGFubywgQWxleGFuZHJlIFIu|https://frl.publisso.de/adhoc/creator/R2FsdmFvLCBTdGVwaGFuIFIu|https://frl.publisso.de/adhoc/creator/VGFudGlhLCBNYWRodSBTLg==|https://frl.publisso.de/adhoc/creator/VmlqaCwgUmFtZXNoIEsu|https://frl.publisso.de/adhoc/creator/TWlzaHJhLCBCaW5h|https://frl.publisso.de/adhoc/creator/S3VtYXIsIFMuIFQuIEJoYXJhbmk=|https://frl.publisso.de/adhoc/creator/UGVsYWksIFZhbmRlcmxlaSBBLg==|https://frl.publisso.de/adhoc/creator/U2FudGFuYSwgQW5kcmUgTS4=|https://frl.publisso.de/adhoc/creator/Rm9ybml0YW5vLCBMYXJpc3NhIEMu|https://frl.publisso.de/adhoc/creator/Sm9uZXMsIEJyaXR0YW55IEMu|https://frl.publisso.de/adhoc/creator/VG9uaGF0aSwgSHVtYmVydG8=|https://frl.publisso.de/adhoc/creator/TW9vcmUsIFN0ZXBoZW4=|https://frl.publisso.de/adhoc/creator/U3RvdGhhcmQsIFBhdWw=|https://frl.publisso.de/adhoc/creator/V29tYWNrLCBKYW1lcyBFLg==|http://orcid.org/0000-0003-1215-5504
1000 Label
1000 Förderer
  1. FAPESP-Brazil |
  2. NSF-USA |
  3. CNPq - Conselho Nacional de Desenvolvimento Cientifico e Tecnologico, of the Ministry for Science and Technology of Brazil |
  4. Department of Biotechnology, Government of India, New Delhi |
  5. Alberta Livestock Industry Development |
1000 Fördernummer
  1. 02/10150-5
  2. OISE-0405743
  3. PDE-210280/2006-9; 472359/07-0
  4. -
  5. -
1000 Förderprogramm
  1. -
  2. -
  3. -
  4. -
  5. -
1000 Dateien
1000 Förderung
  1. 1000 joinedFunding-child
    1000 Förderer FAPESP-Brazil |
    1000 Förderprogramm -
    1000 Fördernummer 02/10150-5
  2. 1000 joinedFunding-child
    1000 Förderer NSF-USA |
    1000 Förderprogramm -
    1000 Fördernummer OISE-0405743
  3. 1000 joinedFunding-child
    1000 Förderer CNPq - Conselho Nacional de Desenvolvimento Cientifico e Tecnologico, of the Ministry for Science and Technology of Brazil |
    1000 Förderprogramm -
    1000 Fördernummer PDE-210280/2006-9; 472359/07-0
  4. 1000 joinedFunding-child
    1000 Förderer Department of Biotechnology, Government of India, New Delhi |
    1000 Förderprogramm -
    1000 Fördernummer -
  5. 1000 joinedFunding-child
    1000 Förderer Alberta Livestock Industry Development |
    1000 Förderprogramm -
    1000 Fördernummer -
1000 Objektart article
1000 Beschrieben durch
1000 @id frl:6402727.rdf
1000 Erstellt am 2017-06-01T12:30:44.626+0200
1000 Erstellt von 21
1000 beschreibt frl:6402727
1000 Bearbeitet von 218
1000 Zuletzt bearbeitet 2021-07-23T13:46:34.241+0200
1000 Objekt bearb. Fri Jul 23 13:46:33 CEST 2021
1000 Vgl. frl:6402727
1000 Oai Id
  1. oai:frl.publisso.de:frl:6402727 |
1000 Sichtbarkeit Metadaten public
1000 Sichtbarkeit Daten public
1000 Gegenstand von

View source