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1000 Titel
  • Spatial and temporal regularization to estimate COVID-19 reproduction number R(t): Promoting piecewise smoothness via convex optimization
1000 Autor/in
  1. Abry, Patrice |
  2. Pustelnik, Nelly |
  3. Roux, Stéphane |
  4. Jensen, Pablo |
  5. Flandrin, Patrick |
  6. Gribonval, Rémi |
  7. Lucas, Charles-Gérard |
  8. Guichard, Eric |
  9. Borgnat, Pierre |
  10. Garnier, Nicolas |
1000 Erscheinungsjahr 2020
1000 Publikationstyp
  1. Artikel |
1000 Online veröffentlicht
  • 2020-08-20
1000 Erschienen in
1000 Quellenangabe
  • 15(8):e0237901
1000 Copyrightjahr
  • 2020
1000 Lizenz
1000 Verlagsversion
  • https://doi.org/10.1371/journal.pone.0237901 |
  • https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7444593/ |
1000 Publikationsstatus
1000 Begutachtungsstatus
1000 Sprache der Publikation
1000 Abstract/Summary
  • Among the different indicators that quantify the spread of an epidemic such as the on-going COVID-19, stands first the reproduction number which measures how many people can be contaminated by an infected person. In order to permit the monitoring of the evolution of this number, a new estimation procedure is proposed here, assuming a well-accepted model for current incidence data, based on past observations. The novelty of the proposed approach is twofold: 1) the estimation of the reproduction number is achieved by convex optimization within a proximal-based inverse problem formulation, with constraints aimed at promoting piecewise smoothness; 2) the approach is developed in a multivariate setting, allowing for the simultaneous handling of multiple time series attached to different geographical regions, together with a spatial (graph-based) regularization of their evolutions in time. The effectiveness of the approach is first supported by simulations, and two main applications to real COVID-19 data are then discussed. The first one refers to the comparative evolution of the reproduction number for a number of countries, while the second one focuses on French departments and their joint analysis, leading to dynamic maps revealing the temporal co-evolution of their reproduction numbers.
1000 Sacherschließung
lokal Epidemiology
gnd 1206347392 COVID-19
lokal Algorithms
lokal France
lokal Geographical regions
lokal Preprocessing
lokal Optimization
lokal Pandemics
1000 Fächerklassifikation (DDC)
1000 Liste der Beteiligten
  1. https://orcid.org/0000-0002-7096-8290|https://frl.publisso.de/adhoc/uri/UHVzdGVsbmlrLCBOZWxseQ==|https://frl.publisso.de/adhoc/uri/Um91eCwgU3TDqXBoYW5l|https://frl.publisso.de/adhoc/uri/SmVuc2VuLCBQYWJsbw==|https://frl.publisso.de/adhoc/uri/RmxhbmRyaW4sIFBhdHJpY2sg|https://frl.publisso.de/adhoc/uri/R3JpYm9udmFsLCBSw6ltaQ==|https://frl.publisso.de/adhoc/uri/THVjYXMsIENoYXJsZXMtR8OpcmFyZA==|https://orcid.org/0000-0003-3357-1259|https://orcid.org/0000-0003-4536-8354|https://orcid.org/0000-0002-1094-7201
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1000 Dateien
1000 Objektart article
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1000 @id frl:6426248.rdf
1000 Erstellt am 2021-03-18T10:37:28.874+0100
1000 Erstellt von 5
1000 beschreibt frl:6426248
1000 Bearbeitet von 25
1000 Zuletzt bearbeitet Wed May 05 09:20:35 CEST 2021
1000 Objekt bearb. Wed May 05 09:20:25 CEST 2021
1000 Vgl. frl:6426248
1000 Oai Id
  1. oai:frl.publisso.de:frl:6426248 |
1000 Sichtbarkeit Metadaten public
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