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1000 Titel
  • Classification of target tissues of Eisenia fetida using sequential multimodal chemical analysis and machine learning
1000 Autor/in
  1. Ritschar, Sven |
  2. Schirmer, Elisabeth |
  3. Hufnagl, Benedikt |
  4. Löder, Martin G. J. |
  5. Römpp, Andreas |
  6. Laforsch, Christian |
1000 Erscheinungsjahr 2021
1000 Publikationstyp
  1. Artikel |
1000 Online veröffentlicht
  • 2021-11-08
1000 Erschienen in
1000 Quellenangabe
  • 157(2):127-137
1000 Copyrightjahr
  • 2021
1000 Lizenz
1000 Verlagsversion
  • https://doi.org/10.1007/s00418-021-02037-1 |
  • https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8847259/ |
1000 Publikationsstatus
1000 Begutachtungsstatus
1000 Sprache der Publikation
1000 Abstract/Summary
  • Acquiring comprehensive knowledge about the uptake of pollutants, impact on tissue integrity and the effects at the molecular level in organisms is of increasing interest due to the environmental exposure to numerous contaminants. The analysis of tissues can be performed by histological examination, which is still time-consuming and restricted to target-specific staining methods. The histological approaches can be complemented with chemical imaging analysis. Chemical imaging of tissue sections is typically performed using a single imaging approach. However, for toxicological testing of environmental pollutants, a multimodal approach combined with improved data acquisition and evaluation is desirable, since it may allow for more rapid tissue characterization and give further information on ecotoxicological effects at the tissue level. Therefore, using the soil model organism Eisenia fetida as a model, we developed a sequential workflow combining Fourier transform infrared spectroscopy (FTIR) and matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI) for chemical analysis of the same tissue sections. Data analysis of the FTIR spectra via random decision forest (RDF) classification enabled the rapid identification of target tissues (e.g., digestive tissue), which are relevant from an ecotoxicological point of view. MALDI imaging analysis provided specific lipid species which are sensitive to metabolic changes and environmental stressors. Taken together, our approach provides a fast and reproducible workflow for label-free histochemical tissue analyses in E. fetida, which can be applied to other model organisms as well.
1000 Sacherschließung
lokal
lokal Spectroscopy, Fourier Transform Infrared [MeSH]
lokal Multimodal imaging
lokal Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization [MeSH]
lokal Animals [MeSH]
lokal MALDI-MSI
lokal Digestive System/cytology [MeSH]
lokal Image Processing, Computer-Assisted [MeSH]
lokal FTIR
lokal Tissue analysis
lokal Machine Learning [MeSH]
lokal Short Communication
lokal Random decision forest
lokal Oligochaeta/cytology [MeSH]
1000 Liste der Beteiligten
  1. https://frl.publisso.de/adhoc/uri/Uml0c2NoYXIsIFN2ZW4=|https://frl.publisso.de/adhoc/uri/U2NoaXJtZXIsIEVsaXNhYmV0aA==|https://frl.publisso.de/adhoc/uri/SHVmbmFnbCwgQmVuZWRpa3Q=|https://frl.publisso.de/adhoc/uri/TMO2ZGVyLCBNYXJ0aW4gRy4gSi4=|https://frl.publisso.de/adhoc/uri/UsO2bXBwLCBBbmRyZWFz|https://orcid.org/0000-0002-5889-4647
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  • DeepGreen-ID: 42800f532ddb47cc99c40f3a35c81f2d ; metadata provieded by: DeepGreen (https://www.oa-deepgreen.de/api/v1/), LIVIVO search scope life sciences (http://z3950.zbmed.de:6210/livivo), Crossref Unified Resource API (https://api.crossref.org/swagger-ui/index.html), to.science.api (https://frl.publisso.de/), ZDB JSON-API (beta) (https://zeitschriftendatenbank.de/api/), lobid - Dateninfrastruktur für Bibliotheken (https://lobid.org/resources/search)
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1000 Erstellt am 2023-05-09T11:06:39.582+0200
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1000 Zuletzt bearbeitet 2023-10-21T02:42:35.860+0200
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